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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24737582_24739327_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24737582 - 24739327
Intron Length:
1746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
AACATTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AACTTTTTAAAA
Flanking Amino Acid:
AEMDHYKKLLMMKSTELDVC
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
81.6
32.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
68.4
0.41
0.9
65.9
39.8
Minor 5ss
45.1
-0.5
3.4
69
41.9
Minor BPS
60.5
0.33
1.3
63.52
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010703
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018256
24727626 - 24777921
50296
ENSAPLT00000036921
24727626 - 24777921
50296
ENSAPLT00000011161
24727626 - 24762883
35258
ENSAPLT00000029872
24727626 - 24778373
50748
ENSAPLT00000027332
24727626 - 24753026
25401
ENSAPLT00000021103
24727626 - 24778373
50748
ENSAPLT00000044078
24727626 - 24778373
50748