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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24753030_24757257_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24753030 - 24757257
Intron Length:
4228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGGGCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GGTGGCCAAACT
Flanking Amino Acid:
RCRELQKETLEDRAERFFPT
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
62.3
0.28
1.1
53.3
45.8
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
42.1
-0.5
2.3
61.99
47.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010703
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018477
24752830 - 24778373
25544