About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24757444_24760337_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24757444 - 24760337
Intron Length:
2894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
AATTTGACAACA
Flanking Amino Acid:
IKTVSKEALTEIPKLNQRLA
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.4
23.9
Major BPS
75.8
0.64
1
65.8
41
Major PPT
89.7
0.89
0.6
89.1
19.9
Minor 5ss
41.2
-1
3
57.8
46.8
Minor BPS
43.6
-0.4
2.3
60.07
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010703
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018256
24727626 - 24777921
50296
ENSAPLT00000044078
24727626 - 24778373
50748
ENSAPLT00000011161
24727626 - 24762883
35258
ENSAPLT00000036921
24727626 - 24777921
50296
ENSAPLT00000029872
24727626 - 24778373
50748
ENSAPLT00000018477
24752830 - 24778373
25544