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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24757444_24761043_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24757444 - 24761043
Intron Length:
3600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
AATTTGACAACA
Flanking Amino Acid:
KLPISNHKCSEIPKLNQRLA
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
75.8
0.64
1
65.8
41
Major PPT
89.7
0.89
0.6
89.1
19.9
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
43.6
-0.4
2.3
60.07
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010703
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021103
24727626 - 24778373
50748