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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24760514_24761043_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24760514 - 24761043
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTGGTATTACTT
Flanking Amino Acid:
EAAYKQSQVLRNTLEHHCST
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.9
0.81
0.8
80.6
31.5
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
44.9
-0.3
1.9
59.51
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010703
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011161
24727626 - 24762883
35258
ENSAPLT00000036921
24727626 - 24777921
50296
ENSAPLT00000029872
24727626 - 24778373
50748
ENSAPLT00000018477
24752830 - 24778373
25544
ENSAPLT00000018256
24727626 - 24777921
50296
ENSAPLT00000044078
24727626 - 24778373
50748