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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24761164_24762695_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24761164 - 24762695
Intron Length:
1532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAAGG
5'SS Class:
major
3'SS Sequence:
TTTGAATCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTATTTGAATC
Flanking Amino Acid:
RGGWFRSHFFRITNLTKELK
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
62.5
43.9
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
73.4
0.53
0.9
66.6
39.4
Minor 5ss
26
-2.8
3
30.8
42.8
Minor BPS
61.2
0.33
1.4
71.31
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010703
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011161
24727626 - 24762883
35258