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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24761164_24770424_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24761164 - 24770424
Intron Length:
9261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGAGCA
5'SS Class:
major
3'SS Sequence:
TTTGAATCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTATTTGAATC
Flanking Amino Acid:
CRADRESKTERITNLTKELK
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.3
68.7
36.4
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
73.4
0.53
0.9
66.6
39.4
Minor 5ss
26.1
-2.7
3
31.3
42.3
Minor BPS
61.2
0.33
1.4
71.31
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010703
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018477
24752830 - 24778373
25544
ENSAPLT00000044078
24727626 - 24778373
50748
ENSAPLT00000018256
24727626 - 24777921
50296
ENSAPLT00000036921
24727626 - 24777921
50296
ENSAPLT00000029872
24727626 - 24778373
50748
ENSAPLT00000021103
24727626 - 24778373
50748