Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24774754_24777051_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

24774754 - 24777051

Intron Length:

2298

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTACGCCT

5'SS Class:

major

3'SS Sequence:

CTTTGTTTAACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAACCAT

U12 Branch Point Sequence:

CTTTGTTTAACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.1

0.31

1.4

59.1

45.3

Major BPS

57.8

0.19

1.3

67.1

39.2

Major PPT

80.7

0.69

0.9

76.7

36.2

Minor 5ss

35.3

-1.7

3.2

49.6

46.2

Minor BPS

69.3

0.6

1.8

78.6

38.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010703

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018256

24727626 - 24777921

50296