Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24774754_24778207_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

24774754 - 24778207

Intron Length:

3454

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACGGGAT

5'SS Class:

strong_major

3'SS Sequence:

CTTTGTTTAACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAACCAT

U12 Branch Point Sequence:

CTTTGTTTAACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

73.2

37.8

Major BPS

57.8

0.19

1.3

67.1

39.2

Major PPT

80.7

0.69

0.9

76.7

36.2

Minor 5ss

29.8

-2.3

3.8

49.3

Minor BPS

69.3

0.6

1.8

78.6

38.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010703

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044078

24727626 - 24778373

50748