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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24799219_24799811_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24799219 - 24799811
Intron Length:
593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TCATCTTCACTT
Flanking Amino Acid:
QNQFLWEKYKRKKEYMSKKM
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
89.3
0.88
0.7
81.9
34.4
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
50.3
0.09
1.8
68.4
43.2

Associated Gene:

Gene:
TIPARP
Ensembl Gene ID:
ENSAPLG00000010788
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011247
24798771 - 24825750
26980