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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24803960_24804479_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24803960 - 24804479
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTCTCTTCAAAC
Flanking Amino Acid:
DHFVWREYSEPVVRLIEEAS
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
81.6
31.4
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
73.5
0.53
0.9
70
34.2
Minor 5ss
43.6
-0.7
2.6
59.8
44.7
Minor BPS
61.8
0.35
1.6
71.74
39.5

Associated Gene:

Gene:
TIPARP
Ensembl Gene ID:
ENSAPLG00000010788
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011247
24798771 - 24825750
26980