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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24826459_24827171_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24826459 - 24827171
Intron Length:
713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GCAACTTTAACA
Flanking Amino Acid:
YKNVKFVLKHKVAQKREDAV
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
30.1
Major BPS
100
1.24
0.5
100
0
Major PPT
83.1
0.75
0.9
77
36.7
Minor 5ss
31.6
-2.1
3.2
41.8
38.8
Minor BPS
65.4
0.48
1.3
65.73
40.5

Associated Gene:

Gene:
SSR3
Ensembl Gene ID:
ENSAPLG00000010825
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040894
24826040 - 24828467
2428
ENSAPLT00000011278
24826040 - 24829082
3043