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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24833484_24834423_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24833484 - 24834423
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTTT
5'SS Class:
strong_major
3'SS Sequence:
GGTTTGCTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
TTACAACTGACA
Flanking Amino Acid:
VPESSRAALKCYQWLKEKII
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
82.4
30.8
Major BPS
64.7
0.37
1
73
31.5
Major PPT
76.1
0.59
1
65.9
45.3
Minor 5ss
58.1
0.27
2.3
76
39.6
Minor BPS
44.1
-0.4
2
60.48
38.2

Associated Gene:

Gene:
KCNAB1
Ensembl Gene ID:
ENSAPLG00000011083
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024791
24832668 - 24841196
8529