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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24835028_24835156_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24835028 - 24835156
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGGCGAG
U12 Branch Point Sequence:
TTTTGCTGGTTT
Flanking Amino Acid:
TSRWSAMEIMEAYSVARQFN
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
71
34.4
Major BPS
33.1
-1
1.4
19
34.1
Major PPT
85.3
0.79
0.7
77.4
31.4
Minor 5ss
28.7
-2.4
3.5
34
43.2
Minor BPS
40
-0.7
3.7
75.38
42

Associated Gene:

Gene:
KCNAB1
Ensembl Gene ID:
ENSAPLG00000011083
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024791
24832668 - 24841196
8529