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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24838817_24840136_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
24838817 - 24840136
Intron Length:
1320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTGCCGTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TTTCTCTCTGCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
74.9
35.3
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
71
0.47
0.9
65
36.3
Minor 5ss
28.5
-2.5
3.4
40.8
45.6
Minor BPS
39.2
-0.7
3.6
73.52
43.1

Associated Gene:

Gene:
KCNAB1
Ensembl Gene ID:
ENSAPLG00000011083
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024791
24832668 - 24841196
8529