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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24840181_24840569_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
24840181 - 24840569
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTCG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTAAC
U12 Branch Point Sequence:
AGCCCCCTAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.2
35.7
Major BPS
59.7
0.24
1.1
61.2
32.6
Major PPT
86.5
0.82
0.8
80.9
31
Minor 5ss
42.2
-0.9
2.7
51.1
39.5
Minor BPS
59.5
0.38
1.7
73.92
42.1

Associated Gene:

Gene:
KCNAB1
Ensembl Gene ID:
ENSAPLG00000011083
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024791
24832668 - 24841196
8529