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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24880055_24880851_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
24880055 - 24880851
Intron Length:
797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATACGA
5'SS Class:
major
3'SS Sequence:
TCCACCACAATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGATTT
Flanking Amino Acid:
ATPGNEIPEEVVLKMVVEIK
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
64.5
41.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
57.6
0.17
0.9
51.9
31.1
Minor 5ss
31.4
-2.1
3
40.1
45.3
Minor BPS
64
0.52
1.7
84.31
36.7

Associated Gene:

Gene:
GMPS
Ensembl Gene ID:
ENSAPLG00000011347
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011807
24879495 - 24892646
13152