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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24882798_24884447_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24882798 - 24884447
Intron Length:
1650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GCTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
TTAAACAAAACG
Flanking Amino Acid:
LIPRMCHNINRVVYVFGPPV
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
69
0.47
1
69.9
32.6
Major PPT
83.3
0.75
0.9
80.2
37.3
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
44.4
-0.5
2.1
55.43
44.9

Associated Gene:

Gene:
GMPS
Ensembl Gene ID:
ENSAPLG00000011347
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011807
24879495 - 24892646
13152