About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24889790_24890414_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24889790 - 24890414
Intron Length:
625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTGT
5'SS Class:
major
3'SS Sequence:
GTACATCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTACAT
U12 Branch Point Sequence:
TCTTCTGTACAT
Flanking Amino Acid:
RKIIGDTFVKIANEVIGEMN
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
72.3
39.7
Major BPS
67.6
0.44
1.2
75
40
Major PPT
73.2
0.52
1
65.2
40.7
Minor 5ss
38.5
-1.3
3.4
56.5
47.6
Minor BPS
47.7
-0.1
2.3
72.3
45

Associated Gene:

Gene:
GMPS
Ensembl Gene ID:
ENSAPLG00000011347
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011807
24879495 - 24892646
13152