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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24890567_24892079_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24890567 - 24892079
Intron Length:
1513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCATAA
5'SS Class:
major
3'SS Sequence:
TAATTTCATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTCCCGTAATT
Flanking Amino Acid:
ALKKLGIQVKVVNAAHSFYN
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.2
65
37.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75.9
0.58
1
70.8
39.6
Minor 5ss
41.7
-0.9
3.2
56.1
48.1
Minor BPS
64.1
0.52
2
83.91
36.9

Associated Gene:

Gene:
GMPS
Ensembl Gene ID:
ENSAPLG00000011347
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011807
24879495 - 24892646
13152