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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24903632_24906886_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24903632 - 24906886
Intron Length:
3255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGCCT
5'SS Class:
major
3'SS Sequence:
TTTTTTATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTATTC
Flanking Amino Acid:
PQPRGIVTLSDFLFFWGAVF
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
57.9
46.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.5
0.96
0.7
85.7
33.4
Minor 5ss
37.5
-1.4
3.6
57
47.3
Minor BPS
62.3
0.36
1.5
70.52
35.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018174
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017826
24902644 - 24912786
10143