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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24907907_24908855_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24907907 - 24908855
Intron Length:
949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTATTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
TTTCTCTTATTC
Flanking Amino Acid:
LNTFYKAMPFRLLFGLEFAF
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
83.2
0.75
0.8
77.5
31.2
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
65.1
0.45
1.5
75.25
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018174
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017826
24902644 - 24912786
10143