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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24909328_24910932_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24909328 - 24910932
Intron Length:
1605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
AATGCCTCAACC
Flanking Amino Acid:
QACGTPAAAELCTKAGGSCV
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
81.7
0.71
0.9
76.2
37.8
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
63.3
0.4
1.7
70.64
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018174
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017826
24902644 - 24912786
10143