Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24919527_24920444_F

Intron Information:

Intron Rank:

Intron Class:

major_hybrid

Intron Phase:

Intron Coordinates:

24919527 - 24920444

Intron Length:

918

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

GGGCAATCCAAAG|G

3'SS Class:

major_hybrid

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

TTCTCTTTATCT

Flanking Amino Acid:

IPIVTSIQRKCLLLVRLAGV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.9

85.3

25.4

Major BPS

83.9

0.84

73.9

41.3

Major PPT

47.8

-0.1

1.1

41.1

37.4

Minor 5ss

37.5

-1.4

2.8

46.9

41.8

Minor BPS

73.4

0.81

1.5

87.39

38.7

Associated Gene:

Gene:

C3orf33

Ensembl Gene ID:

ENSAPLG00000015160

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017742

24918922 - 24924471

5550