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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24920594_24920986_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24920594 - 24920986
Intron Length:
393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTGTATTTACTG
Flanking Amino Acid:
ALECRVLVNKGRFLSVCLNE
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
89.5
23.2
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
80.6
0.69
0.8
76.4
32.2
Minor 5ss
38.7
-1.3
2.9
50.9
45.5
Minor BPS
50.3
-0.1
1.8
59.52
43.1

Associated Gene:

Gene:
C3orf33
Ensembl Gene ID:
ENSAPLG00000015160
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045425
24919267 - 24921799
2533
ENSAPLT00000038884
24918589 - 24921253
2665
ENSAPLT00000017742
24918922 - 24924471
5550
ENSAPLT00000015793
24918653 - 24922653
4001