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Intron Name: Anas_platyrhynchos_platyrhynchos_9_24924422_24932205_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

24924422 - 24932205

Intron Length:

7784

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGCTG

5'SS Class:

strong_major

3'SS Sequence:

TTTCCCTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

ACCCGTTTAATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.4

43.3

Major BPS

81.8

0.79

1.1

34.5

Major PPT

85.3

0.79

0.6

81.2

23.8

Minor 5ss

34.4

-1.8

3.4

46.7

48.6

Minor BPS

49.8

0.07

1.8

62.81

42.3

Associated Gene:

Gene:

PLCH1

Ensembl Gene ID:

ENSAPLG00000014302

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014957

24924334 - 24986495

62162