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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24932324_24950734_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24932324 - 24950734
Intron Length:
18411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TTCTGCTTAACA
Flanking Amino Acid:
HFLVDNGVFHVERCMSVMQS
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67
39
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
77.5
0.62
0.9
73.1
36.1
Minor 5ss
28.1
-2.5
3.1
35.3
41.4
Minor BPS
74.7
0.77
1.7
83.03
38.2

Associated Gene:

Gene:
PLCH1
Ensembl Gene ID:
ENSAPLG00000014302
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014957
24924334 - 24986495
62162
ENSAPLT00000018105
24932206 - 24987660
55455