Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24932324_24951686_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24932324 - 24951686

Intron Length:

19363

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCCCCTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATTAC

U12 Branch Point Sequence:

AGTATGTCAATT

Flanking Amino Acid:

HFLVDNGVFHVVIDSIYKVT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

Major BPS

74.8

0.62

1.1

40.5

Major PPT

83.4

0.75

0.7

81.4

23.6

Minor 5ss

28.1

-2.5

3.1

35.3

41.4

Minor BPS

45.2

-0.2

2.2

63.78

40.7

Associated Gene:

Gene:

PLCH1

Ensembl Gene ID:

ENSAPLG00000014302

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024689

24932206 - 24986495

54290