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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24950882_24951686_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24950882 - 24951686
Intron Length:
805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAATTTT
5'SS Class:
major
3'SS Sequence:
CTTTTCCCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
AGTATGTCAATT
Flanking Amino Acid:
RPSRKSEKAKIVIDSIYKVT
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
84
27.7
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
83.4
0.75
0.7
81.4
23.6
Minor 5ss
47.2
-0.3
2.9
66.9
38.4
Minor BPS
45.2
-0.2
2.2
63.78
40.7

Associated Gene:

Gene:
PLCH1
Ensembl Gene ID:
ENSAPLG00000014302
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045762
24941526 - 24986495
44970
ENSAPLT00000018105
24932206 - 24987660
55455
ENSAPLT00000014957
24924334 - 24986495
62162