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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24954509_24956176_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24954509 - 24956176
Intron Length:
1668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGTGCC
5'SS Class:
major
3'SS Sequence:
CCTTACCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
GTGTCCTTACCT
Flanking Amino Acid:
PRRKVRQMFQEADTDENQGT
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.3
70.3
35.3
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
72.2
0.5
0.8
69.6
30.8
Minor 5ss
28
-2.5
3.2
36
40.9
Minor BPS
72.6
0.79
1.6
84.68
41.9

Associated Gene:

Gene:
PLCH1
Ensembl Gene ID:
ENSAPLG00000014302
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018105
24932206 - 24987660
55455
ENSAPLT00000014957
24924334 - 24986495
62162
ENSAPLT00000045762
24941526 - 24986495
44970
ENSAPLT00000024689
24932206 - 24986495
54290