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Intron Name: Anas_platyrhynchos_platyrhynchos_9_24956348_24961286_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24956348 - 24961286

Intron Length:

4939

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGGAAA

5'SS Class:

strong_major

3'SS Sequence:

CCTTTCTGTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATAAAT

U12 Branch Point Sequence:

AATACATCAACA

Flanking Amino Acid:

LAQFLKVEQKMNNVTPEYCL

Intron Amino Acid Position:

258

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

76.6

33.7

Major BPS

65.7

0.39

71.3

30.3

Major PPT

80.6

0.69

0.9

76.1

32.4

Minor 5ss

37.7

-1.4

3.1

47.6

48.1

Minor BPS

52.4

0.07

1.8

66.2

39.1

Associated Gene:

Gene:

PLCH1

Ensembl Gene ID:

ENSAPLG00000014302

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018105

24932206 - 24987660

55455

ENSAPLT00000014957

24924334 - 24986495

62162

ENSAPLT00000045762

24941526 - 24986495

44970

ENSAPLT00000024689

24932206 - 24986495

54290