Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24968408_24970454_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24968408 - 24970454

Intron Length:

2047

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTATGTGCA

5'SS Class:

major

3'SS Sequence:

TGATGCTTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAC

U12 Branch Point Sequence:

GCTATTTTAACC

Flanking Amino Acid:

EDDCKLKSCYSNGATEHQVE

Intron Amino Acid Position:

491

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

1.1

69.7

34.4

Major BPS

89.7

0.98

0.7

89.9

Major PPT

77.4

0.62

0.9

73.5

41.6

Minor 5ss

41.5

-0.9

3.1

54.2

43.3

Minor BPS

64.9

0.45

1.3

67.05

38.7

Associated Gene:

Gene:

PLCH1

Ensembl Gene ID:

ENSAPLG00000014302

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024689

24932206 - 24986495

54290

ENSAPLT00000018105

24932206 - 24987660

55455

ENSAPLT00000014957

24924334 - 24986495

62162

ENSAPLT00000045762

24941526 - 24986495

44970