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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24970617_24972657_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24970617 - 24972657
Intron Length:
2041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TAATCATTATTG
Flanking Amino Acid:
HEGLSVNLKQNLDTKEGGKK
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
76.2
39.9
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
76.1
0.59
0.9
71.5
32.9
Minor 5ss
33
-1.9
3.5
49.2
47.1
Minor BPS
50.5
-0.1
1.9
58.93
42.6

Associated Gene:

Gene:
PLCH1
Ensembl Gene ID:
ENSAPLG00000014302
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045762
24941526 - 24986495
44970
ENSAPLT00000024689
24932206 - 24986495
54290
ENSAPLT00000018105
24932206 - 24987660
55455
ENSAPLT00000014957
24924334 - 24986495
62162