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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24972730_24974768_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24972730 - 24974768
Intron Length:
2039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGACAC
U12 Branch Point Sequence:
TCTTTCCCACCA
Flanking Amino Acid:
SLMGNFGKHKKAGKAASKYS
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
57.7
0.19
1.2
66.7
40
Major PPT
77.8
0.63
0.8
71.2
34.5
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
46.5
-0.2
2.1
63.62
42.9

Associated Gene:

Gene:
PLCH1
Ensembl Gene ID:
ENSAPLG00000014302
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045762
24941526 - 24986495
44970
ENSAPLT00000024689
24932206 - 24986495
54290
ENSAPLT00000018105
24932206 - 24987660
55455
ENSAPLT00000014957
24924334 - 24986495
62162