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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24974861_24975591_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24974861 - 24975591
Intron Length:
731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
ACATATAATTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTACATATAATT
Flanking Amino Acid:
SSGKEAGQLHSRLARRRKTV
Intron Amino Acid Position:
599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
73.7
33.1
Major BPS
79
0.72
1
78.4
31.2
Major PPT
64.2
0.32
1.1
60.1
44.1
Minor 5ss
38.7
-1.3
2.9
47.9
47.8
Minor BPS
50.6
0.1
1.7
72.52
38

Associated Gene:

Gene:
PLCH1
Ensembl Gene ID:
ENSAPLG00000014302
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045762
24941526 - 24986495
44970
ENSAPLT00000024689
24932206 - 24986495
54290
ENSAPLT00000018105
24932206 - 24987660
55455
ENSAPLT00000014957
24924334 - 24986495
62162