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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24975693_24976437_F

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
24975693 - 24976437
Intron Length:
745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
ACAATGCACACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
TGTTGATTAACA
Flanking Amino Acid:
SVAAQDIVDDGSTGNVLSFS
Intron Amino Acid Position:
633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
75.2
40.6
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
55
0.11
1
46.6
39.8
Minor 5ss
36
-1.6
3.3
45.6
43.8
Minor BPS
62.4
0.38
2
77.59
38.9

Associated Gene:

Gene:
PLCH1
Ensembl Gene ID:
ENSAPLG00000014302
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045762
24941526 - 24986495
44970
ENSAPLT00000024689
24932206 - 24986495
54290
ENSAPLT00000018105
24932206 - 24987660
55455
ENSAPLT00000014957
24924334 - 24986495
62162