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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24977963_24978427_F

Intron Information:

Intron Rank:
18
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
24977963 - 24978427
Intron Length:
465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTAC
5'SS Class:
strong_major
3'SS Sequence:
CAAAAAAACACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGCTTTTAAAA
Flanking Amino Acid:
PDSMLGDRGEIIDPFVEVEI
Intron Amino Acid Position:
771

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.7
34.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
48.6
-0
1
36.7
37.8
Minor 5ss
43.5
-0.7
3
58.3
46.6
Minor BPS
62.6
0.39
1.4
69.43
36.8

Associated Gene:

Gene:
PLCH1
Ensembl Gene ID:
ENSAPLG00000014302
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024689
24932206 - 24986495
54290
ENSAPLT00000018105
24932206 - 24987660
55455
ENSAPLT00000014957
24924334 - 24986495
62162
ENSAPLT00000045762
24941526 - 24986495
44970