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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24978513_24979101_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24978513 - 24979101
Intron Length:
589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
TTTGTTTCACCT
Flanking Amino Acid:
KDQTRVVDDNGFNPVWEETL
Intron Amino Acid Position:
799

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
75.7
29.2
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
86
0.81
0.8
79.9
37.7
Minor 5ss
37.4
-1.4
3
44.1
44.7
Minor BPS
50.1
0.08
1.9
74.97
42.5

Associated Gene:

Gene:
PLCH1
Ensembl Gene ID:
ENSAPLG00000014302
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024689
24932206 - 24986495
54290
ENSAPLT00000018105
24932206 - 24987660
55455
ENSAPLT00000014957
24924334 - 24986495
62162
ENSAPLT00000045762
24941526 - 24986495
44970