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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24979249_24979622_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24979249 - 24979622
Intron Length:
374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
ATTACTTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TATTACTTTACT
Flanking Amino Acid:
RTVAFSSLVPGYRHVYLEGL
Intron Amino Acid Position:
848

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
80
0.75
1
78.6
31
Major PPT
70.2
0.46
1
63.7
42.1
Minor 5ss
33.5
-1.9
3
41.5
39.2
Minor BPS
68.4
0.66
1.8
86.6
38.6

Associated Gene:

Gene:
PLCH1
Ensembl Gene ID:
ENSAPLG00000014302
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045762
24941526 - 24986495
44970
ENSAPLT00000024689
24932206 - 24986495
54290
ENSAPLT00000018105
24932206 - 24987660
55455
ENSAPLT00000014957
24924334 - 24986495
62162