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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25018994_25019188_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25018994 - 25019188
Intron Length:
195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCAT
5'SS Class:
major
3'SS Sequence:
GTTATGTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTATTGCTAACA
Flanking Amino Acid:
QQLFFLNFAQVWCGTYRPEY
Intron Amino Acid Position:
693

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
72.5
38.4
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
67.4
0.39
1.1
61.9
44.3
Minor 5ss
42
-0.9
2.8
58.7
45.8
Minor BPS
50.9
0.03
2.3
72.55
39.3

Associated Gene:

Gene:
MME
Ensembl Gene ID:
ENSAPLG00000013114
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013789
25015437 - 25050998
35562