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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25019285_25021807_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25019285 - 25021807
Intron Length:
2523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
ATTCATCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TGCTACACAATT
Flanking Amino Acid:
DNGGVRQAYRAYENYVKKNG
Intron Amino Acid Position:
661

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
69.9
41.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
80.4
0.68
0.9
73.2
36.3
Minor 5ss
33.4
-1.9
2.9
35.8
40.7
Minor BPS
47.1
-0.1
2
67.26
43.2

Associated Gene:

Gene:
MME
Ensembl Gene ID:
ENSAPLG00000013114
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013789
25015437 - 25050998
35562