Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25021874_25024085_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25021874 - 25024085

Intron Length:

2212

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTTGC

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTTTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCAGAA

U12 Branch Point Sequence:

TTTTGTTTTACA

Flanking Amino Acid:

FSWDLAGGQQLSGINTLGEN

Intron Amino Acid Position:

639

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

74.9

36.3

Major BPS

64.9

0.37

37.5

Major PPT

92.5

0.96

0.7

87.5

Minor 5ss

46.6

-0.3

2.5

61.6

43.3

Minor BPS

61.2

0.34

2.1

78.96

37.6

Associated Gene:

Gene:

MME

Ensembl Gene ID:

ENSAPLG00000013114

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013789

25015437 - 25050998

35562