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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25024673_25026982_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25024673 - 25026982
Intron Length:
2310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
AGTACCTTAATC
Flanking Amino Acid:
AFYSASRNQIVFPAGILQPP
Intron Amino Acid Position:
554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
88.6
27.1
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
88.7
0.87
0.7
83.9
31
Minor 5ss
42.7
-0.8
3.4
64.1
47.4
Minor BPS
73.7
0.72
1.2
74.74
35.4

Associated Gene:

Gene:
MME
Ensembl Gene ID:
ENSAPLG00000013114
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013789
25015437 - 25050998
35562