Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25027042_25030230_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25027042 - 25030230

Intron Length:

3189

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGA|GTAAGTACT

5'SS Class:

major

3'SS Sequence:

CTCTTGTTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAC

U12 Branch Point Sequence:

CTAACCTTTATT

Flanking Amino Acid:

KKLREKVDKEEWISGAAVVN

Intron Amino Acid Position:

534

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.67

78.2

36.3

Major BPS

84.6

0.86

0.8

83.9

22.3

Major PPT

75.4

0.57

0.8

68.4

37.4

Minor 5ss

39.6

-1.2

2.8

49.5

40.3

Minor BPS

59.6

0.38

1.7

73.46

43.3

Associated Gene:

Gene:

MME

Ensembl Gene ID:

ENSAPLG00000013114

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013789

25015437 - 25050998

35562