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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25032286_25032814_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25032286 - 25032814
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTTCCAAG
Flanking Amino Acid:
EAFAGDSKHVVEEMIADIRD
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.2
40.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73
0.52
1
71.6
38.5
Minor 5ss
36.8
-1.5
3.5
53.4
44.8
Minor BPS
48.7
-0.2
2.1
64.71
43.2

Associated Gene:

Gene:
MME
Ensembl Gene ID:
ENSAPLG00000013114
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013789
25015437 - 25050998
35562