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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25035157_25035255_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25035157 - 25035255
Intron Length:
99

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTACACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTTTTATTACAC
Flanking Amino Acid:
LKSILNKYTPRELQNYMAWR
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81
0.7
0.9
76.8
36.1
Minor 5ss
38
-1.4
3.1
50.1
46.4
Minor BPS
49.1
-0
1.9
65.31
39.8

Associated Gene:

Gene:
MME
Ensembl Gene ID:
ENSAPLG00000013114
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013789
25015437 - 25050998
35562