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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25035393_25037415_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25035393 - 25037415
Intron Length:
2023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
ATTCCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CAGGATTTAACC
Flanking Amino Acid:
NNFSLEINHTVFNWSKFINN
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.8
32
Major BPS
80
0.75
1
78.6
31
Major PPT
85.4
0.8
0.8
77.2
36.4
Minor 5ss
29.4
-2.4
3.2
40.8
45.4
Minor BPS
50.3
-0
1.7
55.83
42.8

Associated Gene:

Gene:
MME
Ensembl Gene ID:
ENSAPLG00000013114
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013789
25015437 - 25050998
35562