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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25037518_25039609_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25037518 - 25039609
Intron Length:
2092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTAACTTTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCATGATTAACT
Flanking Amino Acid:
VMDLEKEIANATTKSEDRND
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
79
29.3
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
68.4
0.41
1
65.3
40.9
Minor 5ss
35.2
-1.7
3
45.1
42.9
Minor BPS
58.8
0.35
2.1
78
44

Associated Gene:

Gene:
MME
Ensembl Gene ID:
ENSAPLG00000013114
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013789
25015437 - 25050998
35562