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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25039745_25042339_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25039745 - 25042339
Intron Length:
2595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTAAATTATTT
Flanking Amino Acid:
YYECTGAYKEACSAYVDFMI
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
75
38.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
89.6
0.89
0.6
85
22.5
Minor 5ss
43.2
-0.7
2.9
56.2
47.9
Minor BPS
49
0
2
75.22
41.2

Associated Gene:

Gene:
MME
Ensembl Gene ID:
ENSAPLG00000013114
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013789
25015437 - 25050998
35562