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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25044595_25045859_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25044595 - 25045859
Intron Length:
1265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTAGG
5'SS Class:
major
3'SS Sequence:
CTGTGTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAA
U12 Branch Point Sequence:
CAGATATTAAGA
Flanking Amino Acid:
LRDELEVVLKDVLDTPKSND
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1.3
72.7
44.5
Major BPS
66.7
0.42
1
58.1
38.5
Major PPT
76
0.59
1
72.6
42.4
Minor 5ss
30.5
-2.2
2.5
34.4
41.1
Minor BPS
44.8
-0.4
1.9
49.71
41.2

Associated Gene:

Gene:
MME
Ensembl Gene ID:
ENSAPLG00000013114
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013789
25015437 - 25050998
35562